https://www.dileep-kishore.com/blog Occasional notes on things I’ve built or had to work through. en https://www.dileep-kishore.com/blog/beril https://www.dileep-kishore.com/blog/beril Skills rather than prompts, and a research plan registered before any result is seen. Tue, 04 Aug 2026 00:00:00 GMT https://www.dileep-kishore.com/blog/commscores https://www.dileep-kishore.com/blog/commscores Features computed from pairs of genome-scale metabolic models add predictive signal beyond growth and SMETANA baselines, and triple the positive yield of the top screening decile. Fri, 17 Jul 2026 00:00:00 GMT https://www.dileep-kishore.com/blog/quantum-biology https://www.dileep-kishore.com/blog/quantum-biology Which parts of simulating a cell are hard in a way a quantum computer might actually help with, and which are not. Tue, 14 Jul 2026 00:00:00 GMT https://www.dileep-kishore.com/blog/trait-prediction https://www.dileep-kishore.com/blog/trait-prediction Cross-dataset prediction of carbon utilisation is limited by disagreement between the experimental label and the annotated mechanism, not by taxonomy or training-set size. Thu, 18 Jun 2026 00:00:00 GMT https://www.dileep-kishore.com/blog/traitweaver https://www.dileep-kishore.com/blog/traitweaver Running a stack of genome annotation tools and getting tables back that actually join. Fri, 12 Jun 2026 00:00:00 GMT https://www.dileep-kishore.com/blog/g2pai https://www.dileep-kishore.com/blog/g2pai Modelling genomics, phenotyping and photosynthesis into one star schema, with LinkML as the source of truth. Wed, 22 Apr 2026 00:00:00 GMT https://www.dileep-kishore.com/blog/cayenne https://www.dileep-kishore.com/blog/cayenne Simulating reaction systems small enough that randomness decides the outcome, and benchmarking the result against the packages that already existed. Sat, 23 Sep 2023 00:00:00 GMT https://www.dileep-kishore.com/blog/micone https://www.dileep-kishore.com/blog/micone Every step of a 16S workflow has several defensible tool choices, and the inferred network changes with them. Sat, 23 Sep 2023 00:00:00 GMT https://www.dileep-kishore.com/blog/mind https://www.dileep-kishore.com/blog/mind Why networks from different microbiome studies refuse to line up, and what a shared schema plus taxonomy projection makes possible. Sun, 07 Aug 2022 00:00:00 GMT https://www.dileep-kishore.com/blog/relearn https://www.dileep-kishore.com/blog/relearn Steering a simulated microbial community by learning the control policy instead of deriving it. Thu, 19 May 2022 00:00:00 GMT